Literature references on U-insertion/deletion RNA editing

Following are literature references to papers on the trypanosome U-insertion/deletion type of RNA editing. I have also included some related papers.

Please let me know by email or on the Bulletin Board if I have missed any papers.
Thanks!


Abraham, J., Feagin, J., and Stuart, K. (1988). Characterization of cytochrome c oxidase III transcripts that are edited only in the 3' region. Cell 55, 267-272. [MED]

Adler, B.K. and Hajduk, S.L. (1994). Mechanisms and origins of RNA editing. Curr. Opin. Genet. Dev. 4, 316-322.[MED]

Adler, B.K., Harris, M.E., Bertrand, K.I., and Hajduk, S.L. (1991). Modification of Trypanosoma brucei mitochondrial rRNA by posttranscriptional 3' polyuridine tail formation. Mol. Cell. Biol. 11, 5878-5884. [MED]

Avila, H. and Simpson, L. (1995). Organization and complexity of minicircle-encoded guide RNAs from Trypanosoma cruzi. RNA 1, 939-947. [WEB]

Avila, H.A., Pereira, J.B., Thiemann, O., De Paiva, E., Degrave, W., Morel, C.M., and Simpson, L. (1993). Detection of Trypanosoma cruzi in blood specimens of chronic chagasic patients by polymerase chain reaction amplification of kinetoplast minicircle DNA: Comparison with serology and xenodiagnosis. J. Clin. Microbiol. 31, 2421-2426. [MED]

Bakalara, N., Simpson, A.M., and Simpson, L. (1989). The Leishmania kinetoplast-mitochondrion contains terminal uridylyltransferase and RNA ligase activities. J. Biol. Chem. 264, 18679-18686. [MED]

Bhat, G.J., Koslowsky, D.J., Feagin, J.E., Smiley, B.L., and Stuart, K. (1990). An extensively edited mitochondrial transcript in kinetoplastids encodes a protein homologous to ATPase subunit 6. Cell 61, 885-894. [MED]

Bhat, G.J., Myler, P.J., and Stuart, K. (1991). The two ATPase 6 mRNAs of Leishmania tarentolae differ at their 3' ends. Mol. Biochem. Parasitol. 48, 139-150. [MED]

Bhat, G.J., Souza, A.E., Feagin, J.E., and Stuart, K. (1992). Transcript-specific developmental regulation of polyadenylation in Trypanosoma brucei mitochondria. Mol. Biochem. Parasitol. 52, 231-240. [MED]

Blum, B. and Simpson, L. (1990). Guide RNAs in kinetoplastid mitochondria have a nonencoded 3' oligo-(U) tail involved in recognition of the pre-edited region. Cell 62, 391-397. [MED]

Blum, B. and Simpson, L. (1992). Formation of gRNA/mRNA chimeric molecules in vitro, the initial step of RNA editing, is dependent on an anchor sequence. Proc. Natl. Acad. Sci. USA 89, 11944-11948. [MED]

Blum, B., Bakalara, N., and Simpson, L. (1990). A model for RNA editing in kinetoplastid mitochondria: "Guide" RNA molecules transcribed from maxicircle DNA provide the edited information. Cell 60, 189-198. [MED]

Blum, B., Sturm, N.R., Simpson, A.M., and Simpson, L. (1991). Chimeric gRNA-mRNA molecules with oligo(U) tails covalently linked at sites of RNA editing suggest that U addition occurs by transesterification. Cell 65, 543-550. [MED]

Braly, P., Simpson, L., and Kretzer, F. (1974). Isolation of kinetoplast-mitochondrial complexes from Leishmania tarentolae. J. Protozool. 21, 782-790. [MED]

Bringaud, F., Peris, M., Zen, K.H., and Simpson, L. (1995). Characterization of two nuclear-encoded protein components of mitochondrial ribonucleoprotein complexes from Leishmania tarentolae. Mol. Biochem. Parasitol. 71, 65-79. [MED]

Bringaud, F., Stripecke, R., Frech, G.C., Freedland, S., Turck, C., Byrne, E.M., and Simpson, L. (1997). Mitochondrial glutamate dehydrogenase from Leishmania tarentolae is a guide RNA-binding protein. Mol. Cell Biol. 17, 3915-3923. [MED]

Byrne, E., Bringaud, F., and Simpson, L. (1995). RNA-protein interactions in the ribonucleoprotein T-complexes in a mitochondrial extract from Leishmania tarentolae. Molecular and Biochemical Parasitology 72, 65-76. [MED]

Byrne, E.M., Connell, G.J., and Simpson, L. (1996). Guide RNA-directed uridine insertion RNA editing in vitro. EMBO J. 15, 6758-6765.[MED]

Chen, K. and Donelson, J. (1980). The sequences of two kinetoplast DNA minicircles of Trypanosoma brucei. Proc. Natl. Acad. Sci. USA 77, 2445-2449. [MED]

Connell, G.J., Byrne, E.M., and Simpson, L. (1997). Guide RNA-independent and guide RNA-dependent uridine insertion into cytochrome b mRNA in a mitochondrial extract from Leishmania tarentolae. J. Biol. Chem. 272, 4212-4218. [MED]

Corell, R.A., Feagin, J.E., Riley, G.R., Strickland, T., Guderian, J.A., Myler, P.J., and Stuart, K. (1993). Trypanosoma brucei minicircles encode multiple guide RNAs which can direct editing of extensively overlapping sequences. Nucleic Acids Res. 21, 4313-4320. [MED]

Corell, R.A., Myler, P., and Stuart, K. (1994). Trypanosoma brucei mitochondrial CR4 gene encodes an extensively edited mRNA with completely edited sequence only in bloodstream forms. Mol. Biochem. Parasitol. 64, 65-74. [MED]

Corell, R.A., Read, L.K., Riley, G.R., Nellissery, J.K., Allen, T.E., Kable, M.L., Wachal, M.D., Seiwert, S.D., Myler, P.J., and Stuart, K.D. (1996). Complexes from Trypanosoma brucei that exhibit deletion editing and other editing-associated properties. Mol. Cell. Biol. 16, 1410-1418.[MED]

Cruz-Reyes, J. and Sollner-Webb, B. (1996). Trypanosome U-deletional RNA editing involves guide RNA-directed endonuclease cleavage, terminal U exonuclease, and RNA ligase activities. Proc. Natl. Acad. Sci. USA 93, 8901-8906.[MED]

de la Cruz, V., Lake, J.A., Simpson, A.M., and Simpson, L. (1985). A minimal ribosomal RNA: Sequence and secondary structure of the 9S kinetoplast ribosomal RNA from Leishmania tarentolae. Proc. Natl. Acad. Sci. USA 82, 1401-1405. [MED]

de la Cruz, V., Neckelmann, N., and Simpson, L. (1984). Sequences of six structural genes and several open reading frames in the kinetoplast maxicircle DNA of Leishmania tarentolae. J. Biol. Chem. 259, 15136-15147. [MED]

de la Cruz, V., Simpson, A., Lake, J., and Simpson, L. (1985). Primary sequence and partial secondary structure of the 12S kinetoplast (mitochondrial) ribosomal RNA from Leishmania tarentolae : Conservation of peptidyl-transferase structural elements. Nucl. Acids Res. 13, 2337-2356. [MED]

Decker, C.J. and Sollner-Webb, B. (1990). RNA editing involves indiscriminate U changes throughout precisely defined editing domains. Cell 61, 1001-1011.][MED]

Degrave, W., Fragoso, S., Britto, C., Van Heuverswyn, H., Kidane, G., Cardoso, M., Mueller, R., Simpson, L., and Morel, C. (1988). Peculiar sequence organization of kinetoplast DNA minicircles form Trypanosoma cruzi. Mol. Biochem. Parasitol. 27, 63-70. [MED]

Donelson, J., Majiwa, F., and Williams, R. (1979). Kinetoplast DNA minicircles of Trypanosoma brucei share regions of sequence homology. Plasmid. 2, 572-588. [MED]

Feagin, J. and Stuart, K. (1985). Differential expression of mitochondrial genes between the life cycle stages of Trypanosoma brucei. Proc. Natl. Acad. Sci. USA 82, 3380-3384. [MED]

Feagin, J. and Stuart, K. (1988). Developmental aspects of uridine addition within mitochondrial transcripts of Trypanosoma brucei. Mol. Cell Biol. 8, 1259-1265. [MED]

Feagin, J., Jasmer, D., and Stuart, K. (1985). Apocytochrome b and other mitochondrial DNA sequences are differentially expressed during the life cycle of Trypanosoma brucei. Nucl. Acids Res. 13, 4577-4596. [MED]

Feagin, J., Jasmer, D., and Stuart, K. (1986). Differential mitochondrial gene expression between slender and stumpy bloodforms of Trypanosoma brucei. Mol. Biochem. Parasitol. 20, 207-214.[MED]

Feagin, J., Jasmer, D., and Stuart, K. (1987). Developmentally regulated addition of nucleotides within apocytochrome b transcripts in Trypanosoma brucei. Cell 49, 337-345. [MED]

Feagin, J.E., Abraham, J., and Stuart, K. (1988). Extensive editing of the cytochrome c oxidase III transcript in Trypanosoma brucei. Cell 53, 413-422. [MED]

Feagin, J.E., Shaw, J.M., Simpson, L., and Stuart, K. (1988). Creation of AUG initiation codons by addition of uridines within cytochrome b transcripts of kinetoplastids. PNAS. 85, 539-543. [MED]

Frech, G.C. and Simpson, L. (1996). Uridine insertion into preedited mRNA by a mitochondrial extract from Leishmania tarentolae: Stereochemical evidence for the enzyme cascade model. Mol. Cell. Biol. 16, 4584-4589. [MED]

Frech, G.C., Bakalara, N., Simpson, L., and Simpson, A.M. (1995). In vitro RNA editing-like activity in a mitochondrial extract from Leishmania tarentolae. EMBO J. 14, 178-187. [MED]

Fu, G. and Kolesnikov, A.A. (1994). Leishmania gymnodactyli and Leishmania infantum minicircles contain the same guide RNA genes as do minicircles of Leishmania tarentolae. Mol. Biochem. Parasitol. 67, 171-174.[MED]

Goringer, H.U., Koslowsky, D.J., Morales, T.H., and Stuart, K. (1994). The formation of mitochondrial ribonucleoprotein complexes involving guide RNA molecules in Trypanosoma brucei. Proc. Natl. Acad. Sci. USA 91, 1776-1780.[MED]

Hajduk, S., Siqueira, A., and Vickerman, K. (1986). Kinetoplast DNA of Bodo caudatus : a noncatenated structure. Mol. Cell Biol. 6, 4372-4378. [MED]

Hajduk, S.L., Harris, M.E., and Pollard, V.W. (1993). RNA editing in kinetoplastid mitochondria. FASEB J. 7, 54-63. [MED]

Harris, M., Decker, C., Sollner-MEDb, B., and Hajduk, S. (1992). Specific cleavage of pre-edited mRNAs in trypanosome mitochondrial extracts. Mol. Cell. Biol. 12, 2591-2598. [MED]

Harris, M.E. and Hajduk, S.L. (1992). Kinetoplastid RNA editing: In vitro formation of cytochrome b gRNA-mRNA chimeras from synthetic substrate RNAs. Cell 68, 1091-1099. [MED]

Harris, M.E., Moore, D.R., and Hajduk, S.L. (1990). Addition of uridines to edited RNAs in trypanosome mitochondria occurs independently of transcription. J. Biol. Chem. 265, 11368-11376. [MED]

Jasmer, D. and Stuart, K. (1986). Conservation of kinetoplastid minicircle characteristics without nucleotide sequence conservation. Mol. Biochem. Parasitol. 18, 257-270. [MED]

Jasmer, D. and Stuart, K. (1986). Sequence organization in African trypanosome minicircles is defined by 18 base pair inverted repeats. Mol. Biochem. Parasitol. 18, 321-332. [MED]

Jasmer, D., Feagin, J., Payne, M., and Stuart, K. (1985). Diverse patterns of expression of the cytochrome c oxidase subunit I gene and unassigned reading frames 4 and 5 during the life cycle of Trypanosoma brucei. Mol. Cell Biol. 5, 3041-3047. [MED]

Jasmer, D., Feagin, J., Payne, M., and Stuart, K. (1987). Variation of G-rich mitochondrial transcripts among stocks of African trypanosomes. Mol. Biochem. Parasitol. 22, 259-272. [MED]

Kable, M.L., Heidmann, S., and Stuart, K.D. (1997). RNA editing: Getting U into RNA. Trends Biochem. Sci. 22, 162-166.[MED]

Kable, M.L., Seiwert, S.D., Heidmann, S., and Stuart, K. (1996). RNA editing: a mechanism for gRNA-specified uridylate insertion into precursor mRNA [see comments]. Science 273, 1189-1195.[MED]

Kim, K.S., Teixeira, S.M.R., Kirchhoff, L.V., and Donelson, J.E. (1994). Transcription and editing of cytochrome oxidase II RNAs in Trypanosoma cruzi. J. Biol. Chem. 269, 1206-1211. [MED]

Köller, J., Müller, U.F., Schmid, B., Missel, A., Kruft, V., Stuart, K., and Göringer, H.U. (1997). Trypanosoma brucei gBP21 - An arginine-rich mitochondrial protein that binds to guide RNA with high affinity. J. Biol. Chem. 272, 3749-37[MED]

Köller, J., Nörskau, G., Paul, A.S., Stuart, K., and Goringer, H.U. (1994). Different Trypanosoma brucei guide RNA molecules associate with an identical complement of mitochondrial proteins in vitro. Nucleic Acids Res. 22, 1988-1995. [MED]

Koslowsky, D.J., Bhat, G.J., Perrollaz, A.L., Feagin, J.E., and Stuart, K. (1990). The MURF3 gene of T. brucei contains multiple domains of extensive editing and is homologous to a subunit of NADH dehydrogenase. Cell 62, 901-911. [MED]

Koslowsky, D.J., Bhat, G.J., Read, L.K., and Stuart, K. (1991). Cycles of progressive realignment of gRNA with mRNA in RNA editing. Cell 67, 537-546. [MED]

Koslowsky, D.J., Goringer, H.U., Morales, T.H., and Stuart, K. (1992). In vitro guide RNA/mRNA chimaera formation in Trypanosoma brucei RNA editing. Nature 356, 807-809. [MED]

Koslowsky, D.J., Riley, G.R., Feagin, J.E., and Stuart, K. (1992). Guide RNAs for transcripts with developmentally regulated RNA editing are present in both life cycle stages of Trypanosoma brucei. Mol. Cell. Biol. 12, 2043-2049. [MED]

LandMEDer, L.F. (1992). The evolution of RNA editing in kinetoplastid protozoa. BioSystems 28, 41-45. [MED]

Landweber, L.F. and Gilbert, W. (1993). RNA editing as a source of genetic variation. Nature 363, 179-182. [MED]

Landweber, L.F. and Gilbert, W. (1994). Phylogenetic analysis of RNA editing: A primitive genetic phenomenon. Proc. Natl. Acad. Sci. USA 91, 918-921. [MED]

Landweber, L.F., Fiks, A.G., and Gilbert, W. (1993). The boundaries of partially edited transcripts are not conserved in kinetoplastids: Implications for the guide RNA model of editing. Proc. Natl. Acad. Sci. USA 90, 9242-9246. [MED]

Lima, B.D. and Simpson, L. (1996). Sequence-dependent in vivo importation of tRNAs into themitochondrion of Leishmania tarentolae. RNA 2, 429-440. [MED]

Maslov, D.A. and Simpson, L. (1992). The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing. Cell 70, 459-467.[MED]

Maslov, D.A. and Simpson, L. (1994). RNA editing and mitochondrial genomic organization in the cryptobiid kinetoplastid protozoan, Trypanoplasma borreli. Mol. Cell. Biol. 14, 8174-8182. [MED]

Maslov, D.A., Avila, H.A., Lake, J.A., and Simpson, L. (1994). Evolution of RNA editing in kinetoplastid protozoa. Nature 365, 345-348. [MED]

Maslov, D.A., Lukes, J., Jirku, M., and Simpson, L. (1996). Phylogeny of trypanosomes as inferred from the small and large subunit rRNAs: Implications for the evolution of parasitism in the trypanosomatid protozoa. Molecular and Biochemical Parasitology 75, 197-205. [MED]

Maslov, D.A., Sturm, N.R., Niner, B.M., Gruszynski, E.S., Peris, M., and Simpson, L. (1992). An intergenic G-rich region in Leishmania tarentolae kinetoplast maxicircle DNA is a pan-edited cryptogene encoding ribosomal protein S12. Mol. Cell. Biol. 12, 56-67. [MED]

Maslov, D.A., Thiemann, O., and Simpson, L. (1994). Editing and misediting of transcripts of the kinetoplast maxicircle G5 (ND3) cryptogene in an old laboratory strain of Leishmania tarentolae. Mol. Biochem. Parasitol. 68, 155-159. [MED]

Michelotti, E. and Hajduk, S. (1987). Developmental regulation of trypanosome mitochondrial DNA gene expression. J. Biol. Chem. 262, 927-932. [MED]

Michelotti, E.F., Harris, M.E., Adler, B., Torri, A.F., and Hajduk, S.L. (1992). Trypanosoma brucei mitochondrial ribosomal RNA synthesis, processing and developmentally regulated expression. Mol. Biochem. Parasitol. 54, 31-42. [MED]

Missel, A., Nörskau, G., Shu, H.H., and Göringer, H.U. (1995). A putative RNA helicase of the DEAD box family from Trypanosoma brucei. Molecular and Biochemical Parasitology 75, 123-126.[MED]

Muhich, M. and Simpson, L. (1986). Specific cleavage of kinetoplast minicircle DNA from Leishmania tarentolae and identification of several additional minicircle sequence classes. Nucl. Acids Res. 14, 5531-5556. [MED]

Muhich, M., Neckelmann, N., and Simpson, L. (1985). The divergent region of the Leishmania tarentolae kinetoplast maxicircle DNA contains a diverse set of repetitive sequences. Nucl. Acids Res. 13, 3241-3260. [MED]

Muhich, M., Simpson, L., and Simpson, A. (1983). Comparison of the maxicircle DNAs of Leishmania tarentolae and Trypanosoma brucei. Proc. Natl. Acad. Sci. USA 80, 4060-4064. [MED]

Myler, P.J., Glick, D., Feagin, J.E., Morales, T.H., and Stuart, K.D. (1993). Structural organization of the maxicircle variable region of Trypanosoma brucei: Identification of potential replication origins and topoisomerase II binding sites. Nucleic Acids Res. 21, 687-694 [MED]

Nasir, A., Cook, G., and Donelson, J. (1987). Sequences of two kinetoplast minicircle DNAs of Trypanosoma (Nanomonas) congolense. Mol. Biochem. Parasitol. 24, 295-300. [MED]

Orr, A.T., Rabets, J.C., Horton, T.L., and Landweber, L.F. (1997). RNA editing missing in mitochondria. RNA Publ. RNA Soc. 3, 335-336.[MED]

Payne, M., Rothwell, V., Jasmer, D., Feagin, J., and Stuart, K. (1985). Identification of mitochondrial genes in Trypanosoma brucei and homology to cytochrome c oxidase II in two different reading frames. Mol. Biochem. Parasitol. 15, 159-170. [MED]

Peris, M., Frech, G.C., Simpson, A.M., Bringaud, F., Byrne, E., Bakker, A., and Simpson, L. (1994). Characterization of two classes of ribonucleoprotein complexes possibly involved in RNA editing from Leishmania tarentolae mitochondria. EMBO J. 13, 1664-1672. [MED]

Peris, M., Simpson, A.M., Grunstein, J., Liliental, J.E., Frech, G.C., and Simpson, L. (1997). Native gel analysis of ribonucleoprotein complexes from a Leishmania tarentolae mitochondrial extract. Molecular and Biochemical Parasitology 85, 9-24.[MED]

Piller, K.J., Decker, C.J., Rusche, L.N., and Sollner-Webb, B. (1995). Trypanosoma brucei mitochondrial guide RNA-mRNA chimera-forming activity cofractionates with an editing-domain-specific endonuclease and RNA ligase and is mimicked by heterologous nuclease and RNA ligase. Mol. Cell Biol. 15, 2925-2932.[MED]

Piller, K.J., Decker, C.J., Rusche, L.N., Harris, M.E., Hajduk, S.L., and Sollner-Webb, B. (1995). Editing domains of Trypanosoma brucei mitochondrial RNAs identified by secondary structure. Mol. Cell Biol. 15, 2916-2924. [MED]

Piller, K.J., Rusché, L.N., and Sollner-Webb, B. (1996). Trypanosoma brucei RNA editing - A full round of uridylate insertional editing in vitro mediated by endonuclease and RNA ligase. J. Biol. Chem. 271, 4613-4619. [MED]

Piller, K.J., Rusche, L.N., Cruz-Reyes, J., and Sollner-Webb, B. (1997). Resolution of the RNA editing gRNA-directed endonuclease from two other endonucleases of Trypanosoma brucei mitochondria. RNA. 3,[MED]

Pollard, V.W. and Hajduk, S.L. (1991). Trypanosoma equiperdum minicircles encode three distinct primary transcripts which exhibit guide RNA characteristics. Mol. Cell. Biol. 11, 1668-1675. [MED]

Pollard, V.W., Harris, M.E., and Hajduk, S.L. (1992). Native mRNA editing complexes from Trypanosoma brucei mitochondria. EMBO J. 11, 4429-4438.[MED]

Pollard, V.W., Rohrer, S.P., Michelotti, E.F., Hancock, K., and Hajduk, S.L. (1990). Organization of minicircle genes for guide RNAs in Trypanosoma brucei. Cell 63, 783-790. [MED]

Priest, J.W. and Hajduk, S.L. (1992). Cytochrome c reductase purified from Crithidia fasciculata contains an atypical cytochrome c1. J. Biol. Chem. 267, 20188-20195.[MED]

Read, L.K. and Stuart, K. (1993). Conservation of gRNA gene cassette structure in African trypanosomes despite divergence in the defining flanking repeats. Mol. Biochem. Parasitol. 60, 333-336. [MED]

Read, L.K., Corell, R.A., and Stuart, K. (1992). Chimeric and truncated RNAs in Trypanosoma brucei suggest transesterifications at non-consecutive sites during RNA editing. Nucleic Acids Res. 20, 2341-2347. [MED]

Read, L.K., Fish, W.R., Muthiani, A.M., and Stuart, K. (1993). Maxicircle DNA and edited mRNA sequences of closely related trypanosome species: Implications of kRNA editing for evolution of maxicircle genomes. Nucleic Acids Res. 21, 4073-4078.[MED]

Read, L.K., Goringer, H.U., and Stuart, K. (1994). Assembly of mitochondrial ribonucleoprotein complexes involves specific guide RNA (gRNA)-binding proteins and gRNA domains but does not require preedited mRNA. Mol. Cell. Biol. 14, 2629-2639.[MED]

Read, L.K., Jacob, A.N.K., Fish, W.R., Muthiani, A.M., and Stuart, K. (1993). Sequences of three Trypanosoma congolense maxicircle genes allow prediction of regions encoding transcripts that undergo extensive RNA editing. Mol. Biochem. Parasitol. 60, 337-342. [MED]

Read, L.K., Myler, P.J., and Stuart, K. (1992). Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei. J. Biol. Chem. 267, 1123-1128.[MED]

Read, L.K., Stankey, K.A., Fish, W.R., Muthiani, A.M., and Stuart, K. (1994). Developmental regulation of RNA editing and polyadenylation in four life cycle stages of Trypanosoma congolense. Mol. Biochem. Parasitol. 68, 297-306. [MED]

Read, L.K., Wilson, K.D., Myler, P.J., and Stuart, K. (1994). Editing of Trypanosoma brucei maxicircle CR5 mRNA generates variable carboxy terminal predicted protein sequences. Nucleic Acids Res. 22, 1489-1495.[MED]

Recinos, R.F., Kirchhoff, L.V., and Donelson, J.E. (1994). Characterization of kinetoplast DNA minicircles in Trypanosoma rangeli. Mol. Biochem. Parasitol. 63, 59-67.[MED]

Riley, G.R., Corell, R.A., and Stuart, K. (1994). Multiple guide RNAs for identical editing of Trypanosoma brucei apocytochrome b mRNA have an unusual minicircle location and are developmentally regulated. J. Biol. Chem. 269, 6101-6108.[MED]

Riley, G.R., Myler, P.J., and Stuart, K. (1995). Quantitation of RNA editing substrates, products and potential intermediates: implications for developmental regulation. Nucleic. Acids. Res. 23, 708-712. [MED]

Rohrer, S.P., Michelotti, E.F., Torri, A.F., and Hajduk, S.L. (1987). Transcription of Kinetoplast DNA Minicircles. Cell 49, 625-632.[MED]

Rusche, L.N., Cruz-Reyes, J., Piller, K.J., and Sollner-Webb, B. (1997). Purification of a functional enzymatic editing complex from Trypanosoma brucei mitochondria. EMBO J. 16, 4069-4081. [MED]

Rusche, L.N., Piller, K.J., and Sollner-Webb, B. (1995). Guide RNA-mRNA chimeras, which are potential RNA editing intermediates, are formed by endonuclease and RNA ligase in a trypanosome mitochondrial extract. Mol. Cell Biol. 15, 2933-2941. [MED]

Sabatini, R. and Hajduk, S.L. (1995). RNA ligase and its involvement in guide RNA/mRNA chimera formation. J. Biol. Chem. 270, 7233-7240. [MED]

Schmid, B., Read, L.K., Stuart, K., and Göringer, H.U. (1996). Experimental verification of the secondary structures of guide RNA-pre-mRNA chimaeric molecules in Trypanosoma brucei. Eur. J. Biochem. 240, 721-731. [WEB]

Schmid, B., Riley, G.R., Stuart, K., and Göringer, H.U. (1995). The secondary structure of guide RNA molecules from Trypanosoma brucei. Nucl. Acids Res. 23, 3093-3102. [MED]

Seiwert, S.D. and Stuart, K. (1994). RNA editing: transfer of genetic information from gRNA to precursor mRNA in vitro. Science 266, 114-117.[MED]

Seiwert, S.D., Heidmann, S., and Stuart, K. (1996). Direct visualization of uridylate deletion in vitro suggests a mechanism for kinetoplastid RNA editing. Cell 84, 831-841. [WEB]

Shaw, J., Campbell, D., and Simpson, L. (1989). Internal frameshifts within the mitochondrial genes for cytochrome oxidase subunit II and maxicircle unidentified reading frame 3 in Leishmania tarentolae are corrected by RNA editing: Evidence for translation of the edited cytochrome oxidase subunit II mRNA. Proc. Natl. Acad. Sci. 86, 6220-6224. [MED]

Shaw, J., Feagin, J.E., Stuart, K., and Simpson, L. (1988). Editing of mitochondrial mRNAs by uridine addition and deletion generates conserved amino acid sequences and AUG initiation codons. Cell 53, 401-411. [MED]

Shu, H.-H. and Stuart, K. (1993). A Trypanosoma brucei minicircle encodes the same gRNAs as do minicircles of T.equiperdum ATCC 30019 and T.evansi type-A minicircles. Nucleic Acids Res. 21, 2951 [MED]

Shu, H.-H. and Stuart, K. (1994). Mitochondrial transcripts are processed but are not edited normally in Trypanosoma equiperdum (ATCC 30019) which has kDNA sequence deletion and duplication. Nucleic Acids Res. 22, 1696-1700.[MED]

Shu, H.H., Stuart, K., and Goringer, H.U. (1995). Guide RNA molecules not engaged in RNA editing form ribonucleoprotein complexes free of mRNA. Biochim. Biophys. Acta 1261, 349-359. [MED]

Simpson, A. and Simpson, L. (1980). Kinetoplast DNA and RNA of Trypanosoma brucei. Mol. Biochem. Parasitol. 2, 93-108. [MED]

Simpson, A., Neckelmann, N., de la Cruz, V., Muhich, M., and Simpson, L. (1985). Mapping and 5' end determination of kinetoplast maxicircle gene transcripts from Leishmania tarentolae. Nucl. Acids Res. 13, 5977-5993. [MED]

Simpson, A.M., Bakalara, N., and Simpson, L. (1992). A ribonuclease activity is activated by heparin or by digestion with proteinase K in mitochondrial extracts of Leishmania tarentolae. J. Biol. Chem. 267, 6782-6788. [MED]

Simpson, A.M., Suyama, Y., Dewes, H., Campbell, D., and Simpson, L. (1989). Kinetoplastid mitochondria contain functional tRNAs which are encoded in nuclear DNA and also small minicircle and maxicircle transcripts of unknown function. Nucl. Acids Res. 17, 5427-5445.[MED]

Simpson, L. (1968). Behavior of the kinetoplast of Leishmania tarentolae. J. Protozool. 15, 132-136. [MED]

Simpson, L. (1972). The kinetoplast of the hemoflagellates. Int Rev. Cytol. 32, 139-207. [MED]

Simpson, L. (1979). Isolation of maxicircle component of kinetoplast DNA from hemoflagellate protozoa. Proc. Natl. Acad. Sci. USA 76, 1585-1588. [MED]

Simpson, L. (1986). Kinetoplast DNA in trypanosomid flagellates. Int Rev. Cytol. 99, 119-179. [MED]

Simpson, L. (1987). The mitochondrial genome of kinetoplastid protozoa: Genomic organization, transcription, replication and evolution. Ann. Rev. Microbiol. 41, 363-382. [MED]

Simpson, L. (1990). RNA editing--A novel genetic phenomenon. Science 250, 512-513. [MED]

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References added after original list:

B. K. Adler and S. L. Hajduk. Guide RNA requirement for editing-site-specific endonucleolytic cleavage of preedited mRNA by mitochondrial ribonucleoprotein particles in Trypanosoma brucei. Mol.Cell.Biol. 17 (9):5377-5385, 1997. [MED]

A. Missel, A. E. Souza, G. Norskau, and H. U. Goringer. (1997) Disruption of a gene encoding a novel mitochondrial DEAD-box protein in Trypanosoma brucei affects edited mRNAs. Mol.Cell Biol. 17:4895-4903. [MED]

Breek, C.K., Speijer, D., Dekker, H., Muijsers, A.O., and Benne, R. (1997). Further evidence for the presence of mitochondrially encoded subunits in cytochrome c oxidase of the trypanosomatid Crithidia fasciculata. Biol.Chem.Hoppe Seyler 378, 837-841. [MED]

Sloof, P. and Benne, R. (1997). RNA editing in kinetoplastid parasites: What to do with U. Trends Microbiol. 5, 189-195. [MED]

Hermann, T., Schmid, B., Heumann, H. and Göringer, H.U. (1997). A three-dimensional working model for a guide RNA from Trypanosoma brucei. Nucleic Acids Res. 25, 2311-2318 [MED]

Koslowsky, D.J. and Yahampath, G. (1997). Mitochondrial mRNA 3' cleavage polyadenylation and RNA editing in Trypanosoma brucei are independent events. Molecular and Biochemical Parasitology 90, 81-94 [MED]

Blom, D., De Haan, A., Van den Berg, M., Sloof, P., Jirku, M., Lukes, J., and Benne, R. (1998). RNA editing in the free-living bodonid Bodo saltans. Nucl.Acids Res. 26, 1205-1213 [MED]

Lukes, J., Jirku, M., Avliyakulov, N., and Benada, O. (1998). Pankinetoplast DNA structure in a primitive bodonid flagellate, Cryptobia helicis. EMBO J. 17, 838-846 [MED]

Cruz-Reyes, J., Rusche, L., Piller, K.J., and Sollner-Webb, B. (1998). T. brucei RNA editing: adenosine nucleotides inversely affect U-deletion and U-insertion reactions at mRNA cleavage. Mol.Cell 1, 401-409 [MED]

Missel, A., A. Souza, G. Norskau and H.U. Goringer (1997). Disruption of a gene encoding a novel mitochondrial DEAD-Box protein in Trypanosoma brucei affects edited mRNAs. Mol. Cell. Biol. 17, 4895-4903 [MED]

Rusche, L.N., Cruz-Reyes, J., Piller, K.J. and Sollner-Webb, B. (1997). Purificationof a functional enzymatic editing complex from Trypanosoma brucei mitochondria. EMBO J. 16, 4069-4081 [MED]

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Last revised on 6-19-98