Guide RNA/mRNA alignment for T. brucei ATPase subunit 6 (MURF4,A6)


1    AAAAAUAAGU AUUUUGAUAU UAUUAAAGUA AAuAuGuuuu uAuuuuuuuu
 
51   uuGuGAuuuA UUUUGGuuGC GuuuGuuAuu AuGuAuGuAu uAuuGuGuAu
                  ||::|::| :|:X||||:| |::||||:|| |||:||||||
                  AAUUAGUG UAGUCAAUGA UGUAUACGUA AUAGCACAUA
 
101  GAuCuAGGuu AuGuuuuAuu GuGuAuuuuA AuUGuuuAAu GuuGAuuuuu
     |||X||X
     CUAUAUA gA6[258]
 
151  GAuuuuuuAu uAuuuuGuuu GUUUGAuuuG uAuuuGuuuG uuGGuuuGuG
             || |||:|::|:| :|||||:||: ||:|||||:: ||||||||||
             UA AUAGAGUAGA UAAACUGAAU AUGAACAAGU AACCAAACAC
 
201  UUUGuuuuuA uuGuuGuGGu uuAuGuuGuu uAAuuuAuAu AGuuuAAUUU
     ||XXX|
     AAUAUA gA6[223]
 
251  UGuAuuAUUG uAuuACuUAU UUGAAuuuGU AuuUGuuGuu uuGuAuuGuu
 
301  uuuuuAuuGu AuAuuGCAuu uuuAuuuuuG uuuuGuuuuu uAuGuGAuuu
 
351  uuuuuuGuuu AAuAAuuuGu UAGuuGGuGA uAGuuuuAuG GAuGuuuuuu
                           ||:X|:::X| ||:|||:|:| |||:X:||||
                           AUUCAUUGAU AUUAAAGUGU CUAUUGAAAA
 
401  uuAUUCGuuu uuuGuuGuGu uuuuuAGAGu GuuuuuCuuu GuuGuGuCGu
     :|||||||:| :||||||||| |X|X|
     GAUAAGCAGA GAACAACACA AUAUA gA6[149]
         ||:XX| ||:|:|||:: :||||||||| :|:||:|:|: ||||||||:|
         AGUUUA AAGCGACAUG GAAAAUCUCA UAGAAGGGAG CAACACAGUA
         :XXX|X X|:::||||: X|||X||||| |:X||||||: :|||||||X|
         GAAUAU UAGUGACACG UAAACUCUCA CGUAAAGAAG UAACACAGAA
 
451  uGuuuGuCGA CGuuuuuGCG uuuGUUUUGu AAuuuAuuAu CAuCCCAuUU
     XXX|                  |X|:|XX|:| ||:|||:||| |X|||||:||
     UAUA gA6[138A]V       AUAUAUUAUA UUGAAUGAUA GAAGGGUGAA
     XXX|
     UAUA gA6[138B]
 
501  UUUAuuGuuG AuGuuuuuuG AuuuuuuuUA uuuuAuuuuu Guuuuuuuuu
     :|:|:||||| |||||||X|: X           ||X|X||:| :::|||:||:
     GAGUGACAAC UACAAAAUAU A gA6[111]  AAUUUAAGA UGGAAAGAAG
 
551  uuuAuGGuGu uuuuuGuuAu uGAuuuAuuu uAuuuAuuuu uGuGuuuuGu
     |:||||:|:| |||:|||||| |||||||||
     AGAUACUAUA AAAGACAAUA ACUAAAUAA gA6[97]
        |:X||:| X|:||:|:|: |||::||:|| ||:||||||| ||||||||||
        UGACAUA UAGAAUAGUG ACUGGAUGAA AUGAAUAAAA ACACAAAACA
 
601  uuuuGuuuAu uAuuuuAUGu GuuuuuAuAu UUGuuGGAuu uAUUuGCCGC
     ||X|::
     AAUAUG gA6[92]
 
651  CAuAuuACAG uuAuuuAuuu uuuGuAAuAu GAuuuuGCAG uuGAuAAuGG
      ||X|X||X: |||X|||||: |||:||X||: :||:|:|||: :|||||||||
      UAAAUUGAU AAUUAAUAAG AAAUAUGAUG UUAGAGCGUU GACUAUUACC
        ||||XX: ||X:|||||| :|:|||X||: :||||::||| ||||||||XX
        UAAUUGU AACGAAUAAA GAGCAUGAUG UUAAAGUGUC AACUAUUAAA
 
701  AuuuuuuGuu GuuuuuGuuG uuuGuuuAGu uuuGuAuuuG AuuuuuGAuA
     |||X|X|                                            |||
     UAAUAUA gA6[48]                                    UAU
     ||X|
     UAUA gA6[51]
 
751  GuuAuuAuAu uGuuGuuGAA AuuuGGuuUG uuAUUGGAGU UAUAGAAUAA
     :||||:|||| :::|||::|| ||:||:||:| ||||:||||| |||||X|||X
     UAAUAGUAUA GUGACAGUUU UAGACUAAGC AAUAGCCUCA AUAUCAUAUA gA6[14]
 
801  GAUCAAAUAA GUUAAUAAUA