Guide RNA/mRNA alignment for T. brucei Cytochrome oxidase subunit 3 (COIII)
1 UUAUUGAGGA UUGUUUAAAA UUGAAUAuAu uAuuAuuuuu uuAuGuuuuu
|
A
51 GuuuCGuuGu AuAuuuGuuG GuGuuAGuGG uGuuuuuGuu uuuuuAuCuu
:|:||:|::| |||:|:|||| :|:|:||||| |||X| |
UAGAGUAGUA UAUGAGCAAC UAUAGUCACC ACAUA gCOIII[232] A
101 uACCuGCCAu uGuuAuuGuG uAuuGGuuAu uuuGuuuGuu GGGAuuuAuu
||X||:X||| ::|:|:||:| :|||:||||| |:|||||||| ||X||X|
AUUGAUAGUA GUAGUGACGC GUAAUCAAUA AGACAAACAA CCAUAUA gCOIII[311]
151 uGuuuAuuGU UUGGuAGuuu uuuAuuuGuu GAuuGuGGuu uuAuuuuuuu
201 uuuuGuuGGu uuuuGuAuuu GuuuGuuGuu GuuAuuGuuA GAuuuGuuuu
251 GuGAuuuuuu ACGuGGuuuA uuuGAuuuuu GuGuuuuAuu ACGuuGuAuC
|XX
UUU
301 CAGuAuuGuu uuuuAuGGuu uuuAuGuAGU GAGuuuGuuu uAuuuAuGGC
X|:|||:::| |||||::||| :|||::|||: |||||||||| |||X|||
AUUAUAGUGA AAAAUGUCAA GAAUGUAUCG CUCAAACAAA AUAUAUA gCOIII[Tb1]
X| |||:||||:|
UA AUAGAUACUG
XXX
AAU
| |||:||||:|
A AUAGAUACUG
|:|||:::| |||||::||| :|||::|||: |||||||||| |||X|||
UUAUAGUGA AAAAUGUCAA GAAUGUAUCG CUCAAACAAA AUAUAUA gCOIII[240]
351 GuuuuuuGUU GuAuuAuuuG GuuuAuGuuu AuuuuuGuGu uGuGAGuuuG
::|:||:::| |||||||||| |||||||||| ||X|X|::
UGAGAAGUGA CAUAAUAGAC UAAAUACAAA UAUAUAUG gCOIII[Tb2]
:XX|||:::| |:||:|||:: ||:|||||:| |||||||||| |:|:X||
UUUAAAGUGA CGUAGUAAGU CAGAUACAGA UAAAAACACA AUAUACA gCOIII[Tb3]
:||XX||:|: ::|:|||:|| :|:||||:|| ||||:||||| |||:||||XX
UAAUUAAUAG UGUGAUAGAC UAGAUACGAA UAAAGACACA ACAUUCAAUA gCOIII[220]
|||:::| |:||:|||:: ||:|||||:| |||||||||| |:|:||
AAAGUGA CGUAGUAAGU CAGAUACAGA UAAAAACACA AUAUAC gCOIII[223]
::|:||:::| |||||||:|| :||||||||| ||X|X|
UGAGAAGUGA CAUAAUAGAC UAAAUACAAA UAUAUA gCOIII[226]
401 CUUUCGuuuu uuGuuuACCu uAuAuGuuuu GuuGuuuAuu AuGuGAuuAu
XX || :|::|:|||: |:||:|:|||
UA gCOIII[220] AA UAGUAGAUAG UGCAUUGAUA
451 GGuuuuGuuu uuuAuuGGUA uuuuuuAGAu uuAuuuAAuu uGuuGAuAAA
:X|||X|
GAUAUAU gCOIII[Tb4]
|:|:||||:X |||||||||| ||X|X| |
CUAGAACAGU AAAUAACCAU AAUAUA gCOIII[194] U
:|:X|||X|
UAGAUAUAU
|||::|| |:|:|:|X|: |||:|:|||| :::|||||||
UAAUUAU AGAGAGUGUG AAUGAGUUAA GUGACUAUUU
501 uACAuuuuAU UUGuuUGuuA GuGGuuuAuu uGuuAAuuuu uuuGuuuuGu
||||:||:|| :|:::||||| :|||:||||| |||||||X|X |X|
AUGUGAAGUA GAUGGACAAU UACCGAAUAA ACAAUUAUAU AUA gCOIII[Tb4]
|||||:|:|| :|:|||||:| |||:|:||:| ||||||||X| X|
AUGUAGAGUA GAUAAACAGU CACUAGAUGA ACAAUUAAUA UA gCOIII[168]
||||:||:|| :|:::||||| :|||:||||| |||||||X|X |
AUGUGAAGUA GAUGGACAAU UACCGAAUAA ACAAUUAUAU A gCOIII[168A]
|||||||||| ||||X|
AUGUAAAAUA AACAUA gCOIII[177]
551 GUUUUUGGuu uAGGuuuuuu uGuuGUUGuu GuuuuGuAuu AuGAuuGAGu
|X:X| ||::|:||:| ::||||:::| ||:||:||:| |:||||||||
AAUUA AUUUAGAAGA GUAACAGUGA CAGAAUAUGA UGCUAACUCA
601 uuGuuGuuuG GuuuuuuGuu uuuGuGAAAC CAGuuAUGAG AGUUUGCAuu
|:X|:X||: :|:||:|:|: |:|:|||||| ||:||||||| |||X::XXX|
AUUAUUAAU UAGAAGAUAG AGAUACUUUG GUUAAUACUC UCAUGUAACA
||||XX : |:|||:||:X
AACAUA gCOIII[147] U UUAAAUGUGU
651 GuuAuuuAuu ACAuuAAGuu GuGGUGuuuu uGGuuCuAuu uuAuuuuuAu
:|XX
UAUA gCOIII[128]
||:|:||||| ||||:||:|: |::||||||| |||||X|||
CAGUGAAUAA UGUAGUUUAG CGUCACAAAA ACCAAUAUA gCOIII[110]
|X:|: :|::|X|:|| ::||||:||: |||||:||||
UAUAG UAUUAGAGAA GUCAAGGUAG AAUAAGAAUA
701 uGGAuuuAuU ACAuuuuAUG CAuGuuuuuu uAGGuGuuuu GuuGuuGuuu
|||||||||| | || :|:|||: ::||:::|:|
ACCUAAAUAA UAUA gCOIII[102] UAUAAAG UGACGGUAGA
751 AuuuGuuuuA uGCGuuuGuu uAAuuuuuuG uGuAuGGAuA CACGuuuuGu
|:||||:||| |:|||||||| |||||X|X|
UGAACAGAAU AUGCAAACAA AUUAAUAUA gCOIII[78]
|||:: |:||::XX|| |||||||::|
AAAGU AUAUGUAGAU GUGCAAAGUA
801 uuuuuuGuAu uGuGuuuGuu uAuAuuGACA uuuuGuuGAU UUAGuuuGAu
:|:|:||||| ||||||XXX| |||::||:|:
GAGAGACAUA ACACAAUAUA gCOIII[62] AAUUGAAUUG
851 uuuuuuuAuu GCGAuuuGuu uAuuuuGAuG uuuuAuGuGu uAuGuAuuuG
|||:|:|||| :||||||||: ||||:||||| ||||||:|:|
AAAGAGAUAA UGCUAAACAG AUAAGACUAC AAAAUAUAUA gCOIII[35]
901 uGuGuGuAAu uuuAuuGGuG uuuuUUUAGU UGuuGAuuAG uuAAuuuGuA
951 uuGGUAGUUU GUAGGAAGUU