Guide RNA/mRNA alignment for T. brucei NADH dehydrogenase 8 (ND8,G1,CR1)
 
 
  1  UUAGAAUCAA UUUAAUAAUU UUAAGUUUUG GUUGAUUAuu AuuuuuuuAu
 
 51  uuuuuuAuuu uuGuAuGuuu uuuuuuGAuu uuuuGuuuuu uuUUUUUGuu
                                                    :|X|XX|
                                                    GACAGUA
     :X||:|XX:| :|:|X|X:|| :::|||X||| ||:::::||| ::|||::X||
     GUAAGACUGA GAUAGAAGAA GGGAAGGUGG AAGGUGGAAA GGAAAGGGAA
 
101  uGuuuuuAuA uGuGUuuuGu uuGuuGuGuu ACuAUUUGuu uACCCAuuGA
     |:|:|:|||| |||:|:||:| :||:|||||| ||||||XXX|        
     AUAGAGAUAU ACAUAGAAUA GACGACACAA UGAUAAUAUA  gCR1[219]
                        || :|:|::|:|: |||||:|||: ||:::|:|||
                        CA GAUAGUAUAG UGAUAGACAG AUGGGUGACU
             XX X||:||XX:| |::|::|:|: ||||X||::: :||||||:|| 
     AUUC    UA UCAUAAUUUA AGUAGUAUAG UGAUUAAUGG GUGGGUAGCU
        gCR1[232]         
 
151  GuuAACCAuu GuuAGuuuAu uGGuuCGuGG uAACCAuuuu uuGCGuUUUU
     :| ||||||| ||XX
     UA-UUGGUAA CAUA gCR1[204]
     ||| |||||| ||XX:|
     CAA-UGGUAA CAUAUA  gCR1[205]
          XX||: :|||:||:|| ||::||:||: |||||||||X ||||||||X|
          UAUAG UAAUUAAGUA ACUGAGUACU AUUGGUAAAU AACGCAAAUA


201  AUUGGuGuGG uuuAGAGCGu uGuAuuGCuu GuCGuuuAuG uGAuuuAAuu
     ||||:::|X: ||||X|:||: |:|||X:||| |:|||X|||| |||||||XX|                                                                                 
     UAACUGUAGU AAAUGUUGCG AUAUAUUGAA CGGCAUAUAC ACUAAAUAUA gCR1[164]
     ||
     UA  gCR1[190]

251  uGCCCuAGuu uAGCAuuGGA uGUUCGuGuu GGGuGGAGuu uuGGuGGuCA
                    |X|X:| :::||:|:|: :|:|:X|||| |::|||:|||
                    UUAAUU GUGAGUAUAG UCUAUGUCAA AGUCACUAGU
 
301  UCGuuuuGCG GAuuGAuuuA CAuuGAGuuA UCGUCGuuGu AuuuAuuGuG
     ||||||XXXX
     AGCAAAUAUA  gCR1[129]
 
351  GuuuuuGuAu GCAuGuuuGC CCGACAGAUG CCAuuACGCA UUCAuuGuuu
 
401  GuuAuGuGuu uuuGuuGuuu AGCCAUGuAu uuAuuGGCGC CCAAGuuuuu
                                                    |:|:|:|
                                                    UUAGAGA
                                 :||| ::|:X|X|:| X||||:||:|
                                 UAUA GGUGUCAGUG AGUUCGAAGA 
 
451  AuuGuuuGGu uGuuGuuuuA uGuuAuuuGA uuuuuAuuuG uGuuuuGuGu
     ||::||::|| |:|:|||||| ||||||||:| X|
     UAGUAAGUCA AUAGCAAAAU ACAAUAAAUA UA  gCR1[44]
     ||::||||:| |||||||||| XXX|||
     UAGUAAACUA ACAACAAAAU UAUAUA gCR1[47]
              X |:|:::|||| |::|||:||| :|:||||:|: ||||:|||||
              U AUAGUGAAAU AUGAUAGACU GAGAAUAGAU ACAAGACACA
 
501  AGuuAuuuAu uuuGGGuGAu uuAuuGUGuu uAuGAuuuAA AGAAAuuCAC
     ||||||X|
     UCAAUAUA  gCR1[34]
 
551  GGUGAAAUUA AAUUUUGACU AAAU