Gene: Cytochrome oxidase 3
Species: Leishmania tarentolae
Notes: Published 5' end is in error and is corrected below. Based on
primer extention. Start of ORF was also corrected.

       1 ---------+---------  +- -   -  -- -  -      27
DNA      AAAAAGTCATTATATAAAA  AA G   G  CG G  A    
RNA-ed   AAAAAGUCAUUAUAUAAAAuuAAuGuuuGuuCGuGuuAuuuu
       1 ---------+---------+---------+---------+--  42
AA                               M  F  V  R  V  I  F  
                                 1  -  -  -  -  -  -   7


28        -  -+ ---------+---------+-----     -    ---+-- -------+--- 73
          G  GG GTTTTGATTTTTGTTTGTTTTGTTG     G    TTTGTC TTACCTGCTAT
         uGuuGGuG   UGA     G  UG    G UGuuuuuGuuuuUUUGUCuUUACCUGCUAU
      43 ------+-   ---     -  --    - -+---------+---------+-------- 88 
          V  G  V     S         G       V  F  V  F  L  S  L  P  A  I  
      8   -  -  +     -         -       -  -  -  -  -  -  -  +  -  -   22 
        

74       ------+---------+---------+---------+---------+---------+--- 133
         TTGCATAGTATATTTAACTTTTTGTTTATGTGGATTGTTTTGTATTATGTTTGGTAGTTT
         UUGCAUAGUAUAUUUAACUUUUUGUUUAUGUGGAUUGUUUUGUAUUAUGUUUGGUAGUUU
     89  -+---------+---------+---------+---------+---------+-------- 148
          C  I  V  Y  L  T  F  C  L  C  G  L  F  C  I  M  F  G  S  F  
      23  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -   42


134      ------+---------+---------+---------+---------+---------+--- 193
         TATTTTTATAGATTATTGTTTTATTTGTTTTTTTGCATGTTTATTATTTTGTTTGGTATG
         UAUUUUUAUAGAUUAUUGUUUUAUUUGUUUUUUUGCAUGUUUAUUAUUUUGUUUGGUAUG
     149 -+---------+---------+---------+---------+---------+--------  208
          I  F  I  D  Y  C  F  I  C  F  F  A  C  L  L  F  C  L  V  C   
       43 -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -   62


194      ------+---------+---------+---------+---------+---------+--- 253
         TTTATTATGTGACTTATTTGTAGACTCTTTAAGAGGTTTATTTGATGTATGTTGCTTTAT
         UUUAUUAUGUGACUUAUUUGUAGACUCUUUAAGAGGUUUAUUUGAUGUAUGUUGCUUUAU
     209 -+---------+---------+---------+---------+---------+-------- 268
          L  L  C  D  L  F  V  D  S  L  R  G  L  F  D  V  C  C  F  I  
       63 -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -   82


     254 ------+---------+---------+---------+---------+---------+--- 313
         ACGTTGTATTCAGTATTGTTTTGTATGATTTATAATTAGTGAATTATTACTTTTTTTATC
         ACGUUGUAUUCAGUAUUGUUUUGUAUGAUUUAUAAUUAGUGAAUUAUUACUUUUUUUAUC
     269 -+---------+---------+---------+---------+---------+-------- 328
          R  C  I  Q  Y  C  F  V  W  F  I  I  S  E  L  L  L  F  L  S  
      83  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  102


     313 ------+---------+---------+---------+---------+---------+--- 372
         TTTATTTTATGTAGTATTTAGTTTAGTTTTATTTGTTAGTGTTGAATTTGCATTTGTTTT
         UUUAUUUUAUGUAGUAUUUAGUUUAGUUUUAUUUGUUAGUGUUGAAUUUGCAUUUGUUUU
     329 -+---------+---------+---------+---------+---------+-------- 388
          L  F  Y  V  V  F  S  L  V  L  F  V  S  V  E  F  A  F  V  F  
     103  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  122


     373 ------+---------+---------+---------+---------+---------+--- 432
         TGTTATACCAGTAATGTTTAGTTGTTTAATTTGTGATTTTGGTTTTGTATTTTATTGATA
         UGUUAUACCAGUAAUGUUUAGUUGUUUAAUUUGUGAUUUUGGUUUUGUAUUUUAUUGAUA
     389 -+---------+---------+---------+---------+---------+-------- 448
          V  I  P  V  M  F  S  C  L  I  C  D  F  G  F  V  F  Y  W  Y  
     123  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -   142


     433 ------+---------+---------+---------+---------+---------+--- 492
         TTTTATTGATATTTTTAATTTACTAATTAATACATTTTTGTTATTTGTGAGTGGTTTATT
         UUUUAUUGAUAUUUUUAAUUUACUAAUUAAUACAUUUUUGUUAUUUGUGAGUGGUUUAUU
     449 -+---------+---------+---------+---------+---------+-------- 508
          F  I  D  I  F  N  L  L  I  N  T  F  L  L  F  V  S  G  L  F  
     143  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  162


     493 ------+---------+---------+---------+---------+---------+--- 552
         CGTAAATTTTGTTTTGTTTTTATTTTGATTTCGTTTTTTTTTATGTGTTTTATTTATGTT
         CGUAAAUUUUGUUUUGUUUUUAUUUUGAUUUCGUUUUUUUUUAUGUGUUUUAUUUAUGUU
     509 -+---------+---------+---------+---------+---------+-------- 568
          V  N  F  V  L  F  L  F  w  F  R  F  F  L  C  V  L  F  M  L  
     163  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  182


     553 ------+---------+---------+---------+---------+---------+--- 612
         ATGAGTAGGAATATTATTTGGTTTTTTATTTTTGTGAAATCAAGTATGAGAATTTGCATT
         AUGAGUAGGAAUAUUAUUUGGUUUUUUAUUUUUGUGAAAUCAAGUAUGAGAAUUUGCAUU
     569 -+---------+---------+---------+---------+---------+-------- 628
          W  V  G  I  L  F  G  F  L  F  L  W  N  Q  V  W  E  F  A  L  
     183  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  202


     613 ------+---------+---------+---------+---------+---------+--- 672
         ATTATTTGTAACATGTAGCTGTGGAGTGTTTGGGTCAATATTATTTTTAATAGATTTATT
         AUUAUUUGUAACAUGUAGCUGUGGAGUGUUUGGGUCAAUAUUAUUUUUAAUAGAUUUAUU
     629 -+---------+---------+---------+---------+---------+-------- 688
          L  F  V  T  C  S  C  G  V  F  G  S  I  L  F  L  I  D  L  L  
     203  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  222


     673 ------+---------+---------+---------+---------+---------+--- 732
         ACATTTTAGTCATGTGTTTTTAGGTATATTTTTATTATTTTTATGTTTTAGTCGTTGCTT
         ACAUUUUAGUCAUGUGUUUUUAGGUAUAUUUUUAUUAUUUUUAUGUUUUAGUCGUUGCUU
     689 -+---------+---------+---------+---------+---------+-------- 748
          H  F  S  H  V  F  L  G  I  F  L  L  F  L  C  F  S  R  C  F  
     223  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  242


     733 ------+---------+---------+---------+---------+---------+--- 792
         TAATTTTTTGTGTATGGATACTCGTTTTGTTTTTTTATATGTAGTCTGTTTATATTGACA
         UAAUUUUUUGUGUAUGGAUACUCGUUUUGUUUUUUUAUAUGUAGUCUGUUUAUAUUGACA
     749 -+---------+---------+---------+---------+---------+-------- 808
          N  F  L  C  M  D  T  R  F  V  F  L  Y  V  V  C  L  Y  W  H  
     243  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  262


     793 ------+---------+---------+---------+---------+---------+--- 852
         TTTTGTAGATTGTGTTTGATTTTTTTTATTACGATTTGTATATTTTGATGTGTTAAGTGT
         UUUUGUAGAUUGUGUUUGAUUUUUUUUAUUACGAUUUGUAUAUUUUGAUGUGUUAAGUGU
     809 -+---------+---------+---------+---------+---------+-------- 868
          F  V  D  C  V  W  F  F  L  L  R  F  V  Y  F  D  V  L  S  V  
     263  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -  +  -  -  282


     853 -------+---------+- 871
         AGTATACTTATATGCATAA
         AGUAUACUUAUAUGCAUAA
     869 -+--------------+-- 882
          V  Y  L  Y  A  *    
     283  -  -  -  -  -      287