Gene: Cytochrome oxidase subunit 3
Species: Trypanosoma brucei
Notes: The 5' ends of edited and preedited mRNAs were mapped by
primer extension to +1 (A. Estevez and L. Simpson, unpublished).
1 ---------+---------+------- - - + - - - ------+ - 41
DNA TTATTGAGGATTGTTTAAAATTGAATA A A A A G G CTTTTTG G
RNA-ed UUAUUGAGGAUUGUUUAAAAUUGAAUAuAuuAuuAuuuuuuuAuGuuuuuGuuuC GuuGu
AA 1 ---------+---------+---------+---------+---------+----- ----+ 60
M F L F R C
1 - - - - - - 6
42 - - - -- - --+---- -- - - - + --- ---- - - + - 71
A A G GG G ATTTTTG GG G G A C ACC GCCA G A G G
AuAuuuGuuGGuGuuA GuGGuGuuuuuGuuuuuuuAuCuuuACCuGCCAuuGuuAuuGuG
61 ---------+------ ---+---------+---------+---------+---------+ 120
I F V G V S G V F V F L S L P A I V I V
7 - - - + - - - - - - - - - + - - - - - - 26
72 - -- - - - --+----- - - - ---------- -+ - - 102
A GG A G G GTTTTGGA A G A GTTTGTTTTG AG A G
uAuuGGuuAuuuuGuuuGuuG GGAuuuAuuuGuuuAuuGUUUG GuAGuuuuuuAuuuGuu
121 ---------+---------+- --------+---------+--- ------+---------+ 180
Y W L F C L L G F I C L L F G S F L F V
27 - - - + - - - - - - - - - + - - - - - - 46
103 +- - ----+- - - -- - - - - + - - - - 124
GA G GTTTTG A G GG G A G G G G A G A
GAuuGuG GuuuuAuuuuuuuuuuuGuuGGuuuuuGuAuuuGuuuGuuGuuGuuAuuGuuA
181 ------- --+---------+---------+---------+---------+---------+ 240
D C G F I F F F V G F C I C L L L L L L
47 - - - + - - - - - - - - - + - - - - - - 66
125 -- - - -+ --- -- - -- - + - --- - - - 147
GA G G GA ACG GG A GA G G A ACG G A C
GAuuuGuuuuGuGAuuuuuuACGuGGuuuAuuuGAuuuuuGuGuuuuAuuACGuuGuAuC
241 ---------+---------+---------+---------+---------+---------+ 300
D L F C D F L R G L F D F C V L L R C I
67 - - - + - - - - - - - - - + - - - - - - 86
148 --+ - - - -- - - --+---- - - - --+- ----- 176
CAG A G A GG A G AGTTGAG G A A GGCG GTTTT
CAGuAuuGuuuuuuAuGGuuuuuAuGuAG UGAGuuuGuuuuAuuuAuGGCGuuuuuuG UU
301 ---------+---------+--------- +---------+---------+-------- -+ 360
Q Y C F L W F L C S E F V L F M A F F V
87 - - - + - - - - - - - - - + - - - - - - 106
177 - - - +- - - - - - - --+ ------- - -+- 201
G A A GG A G A G G G GAG GCTTTCG G ACC
GuAuuAuuuGGuuuAuGuuuAuuuuuGuGuuGuGAGuuuGCUUUCGuuuuuuGuuuACCu
361 ---------+---------+---------+---------+---------+---------+ 420
V L F G L C L F L C C E F A F V F C L P
107 - - - + - - - - - - - - - + - - - - - - 126
202 - - - - - - - - +- - -- - - ---+- --- 224
A A G G G A A G GA A GG G A GGTTA AGA
uAuAuGuuuuGuuGuuuAuuAuGuGAuuAuGGuuuuGuuuuuuAuuGG UAuuuuuuAGAu
421 ---------+---------+---------+---------+---------+---------+ 480
Y M F C C L L C D Y G F V F Y W Y F L D
127 - - - + - - - - - - - - - + - - - - - - 146
225 - -- - -+ --- --- ---+- -- -- -- - - +- 251
A AA G GA AAA ACA ATTTG TG AG GG A G AA
uuAuuuAAuuuGuuGAuAAAuACAuuuuAUUUGuuUGuuAGuGGuuuAuuuGuuAAuuuu
481 ---------+---------+---------+---------+---------+---------+ 540
L F N L L I N T F Y L F V S G L F V N F
147 - - - + - - - - - - - - - + - - - - - - 166
252 - - ------+- --- - ----+- - - - - -- --+ 280
G G GTTTTTGG AGG G GTTTTG G G A A GA GAG
uuuGuuuuGuGUUUUUGGuuuAGGuuuuuuuGuuG UUGuuGuuuuGuAuuAuGAuuGAGu
541 ---------+---------+---------+----- ----+---------+---------+ 600
F V L C F W F R F F C C C C F V L W L S
167 - - - + - - - - - - - - - + - - - - - - 186
281 - - ------ - + -------- -+---------+- - - - 316
G G GTTTTG G G GAAACCAG ATGAGATTGTTTGCA G A A
uuGuuGuuuG GuuuuuuGuuuuuGuGAAACCAGuuAUGAGA GUUUGCAuuGuuAuuuAuu
601 ---------+ ---------+---------+---------+- --------+---------+ 660
L L F G F L F L W N Q L W E F A L L F I
187 - - - + - - - - - - - - - + - - - - - - 206
317 --- +-- - ------+- -- - - - - --+ - ---- ----+ 350
ACA AAG G GGTTTTTG GG C A A A GGA A TACA ATTTG
ACAuuAAGuuGuGG UGuuuuuGGuuCuAuuuuAuuuuuAuuGGAuuuAuUACAuuuuA UG
661 ---------+---- -----+---------+---------+---------+-------- -+ 720
T L S C G V F G S I L F L L D L L H F M
207 - - - + - - - - - - - - - + - - - - - - 226
351 -- - --- - - - + - - - --- - -- + 370
CA G AGG G G G G A G A GCG G AA G
CAuGuuuuuuuAGGuGuuuuGuuGuuGuuuAuuuGuuuuAuGCGuuuGuuuAAuuuuuuG
721 ---------+---------+---------+---------+---------+---------+ 780
H V F L G V L L L F I C F M R L F N F L
227 - - - + - - - - - - - - - + - - - - - - 246
371 - - --- ----+ - - - - - - - - -+-- - --- 396
G A GGA ACACG G G A G G G A A GACA G GAT
uGuAuGGAuACACGuuuuGuuuuuuuGuAuuGuGuuuGuuuAuAuuGACAuuuuGuuGAU
781 ---------+---------+---------+---------+---------+---------+ 840
C M D T R F V F L Y C V C L Y W H F V D
247 - - - + - - - - - - - - - + - - - - - - 266
397 ---+ -- - ---- - - +- - - - - - - - - 419
TTAG GA A GCGA G A GA G A G G A G A G
UUAGuuuGAuuuuuuuuAuuGCGAuuuGuuuAuuuuGAuGuuuuAuGuGuuAuGuAuuuG
841 ---------+---------+---------+---------+---------+---------+ 900
L V W F F L L R F V Y F D V L C V M Y L
267 - - - + - - - - - - - - - + - - - - - - 286
420 + - - -- - -- - -+------ -- -+- -- - - ----+-- 453
G G G AA A GG G TTTAGTTG GA ATG AA G A GGTAGTTT
uGuGuGuAAuuuuAuuGGuGuuuuUUUAGUUGuuGAuuA GuuAAuuGuAuuuGGUAGUUU
901 ---------+---------+---------+--------- +---------+---------+ 960
C V *
287 - - 288
454 -------+-- 463
GTAGGAAGTT
GUAGGAAGUU
961 ---------+ 970