Gene: Cytochrome b
Species: Trypanosoma brucei
Notes: The 5' ends of edited and preedited mRNAs were mapped by 
primer extension to +2 and +1, respectively (A. Estevez and L. Simpson,
unpublished).



       1 ---------+---------+---------+-- - -   --  - --+     -  -     42
DNA      GTTAAGAATAATGGTTATAAATTTTATATAAA A G   CG  G AGA     A  A   
RNA-ed   GUUAAGAAUAAUGGUUAUAAAUUUUAUAUAAAuAuGuuuCGuuGuAGAuuuuuAuuAuuu
       1 ---------+---------+---------+---------+---------+---------+  60
AA                                        M  F  R  C  R  F  L  L  F   
                                        1 -  -  -  -  -  -  -  -  -     9


      43      -  -   -----   + -  --------+---------+---------+------  86
              A  A   AGAAA   G G  GTCTTTTAATGTCAGGTTGTTTATATAGAATATAT
         uuuuuAuuAuuuAGAAAuuuGuGuuGUCUUUUAAUGUCAGGUUGUUUAUAUAGAAUAUAU
      61 ---------+---------+---------+---------+---------+---------+ 120
         F  L  L  F  R  N  L  C  C  L  L  M  S  G  C  L  Y  R  I  Y   
      10 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    29


      87 ---+---------+---------+---------+---------+---------+------ 146
         GGGGTAGGTTTTAGTTTAGGATTTTTTATAGCATTGCAAATAATTTGTGGAGTGTGTTTA
         GGGGUAGGUUUUAGUUUAGGAUUUUUUAUAGCAUUGCAAAUAAUUUGUGGAGUGUGUUUA
     121 ---------+---------+---------+---------+---------+---------+ 180
         G  V  G  F  S  L  G  F  F  I  A  L  Q  I  I  C  G  V  C  L   
      30 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    49


     147 ---+---------+---------+---------+---------+---------+------ 206
         GCTTGATTATTTTTTAGTTGTTTTATTTGTTCAAATTGATATTTTGTATTATTTTTATGA
         GCUUGAUUAUUUUUUAGUUGUUUUAUUUGUUCAAAUUGAUAUUUUGUAUUAUUUUUAUGA
     181 ---------+---------+---------+---------+---------+---------+ 240
         A  W  L  F  F  S  C  F  I  C  S  N  W  Y  F  V  L  F  L  W   
      50 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    69


     207 ---+---------+---------+---------+---------+---------+------ 266
         GATTTTGATTTGGGTTTTGTGATAAGAAGTGTACATATATGTTTTACATCTTTATTATAT
         GAUUUUGAUUUGGGUUUUGUGAUAAGAAGUGUACAUAUAUGUUUUACAUCUUUAUUAUAU
     241 ---------+---------+---------+---------+---------+---------+ 300
         D  F  D  L  G  F  V  I  R  S  V  H  I  C  F  T  S  L  L  Y   
      70 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    89


     267 ---+---------+---------+---------+---------+---------+------ 326
         TTACTATTATATATCCATATATTTAAGTCAATAACGTTAATAATATTGTTTGACACACAT
         UUACUAUUAUAUAUCCAUAUAUUUAAGUCAAUAACGUUAAUAAUAUUGUUUGACACACAU
     301 ---------+---------+---------+---------+---------+---------+ 360
         L  L  L  Y  I  H  I  F  K  S  I  T  L  I  I  L  F  D  T  H   
      90 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   109


     327 ---+---------+---------+---------+---------+---------+------ 386
         ATATTAGTATGATTTATAGGTTTTATATTGTTTGTATTTATAATAATAATAGCTTTTATA
         AUAUUAGUAUGAUUUAUAGGUUUUAUAUUGUUUGUAUUUAUAAUAAUAAUAGCUUUUAUA
     361 ---------+---------+---------+---------+---------+---------+ 420
         I  L  V  W  F  I  G  F  I  L  F  V  F  I  I  I  I  A  F  I   
     110 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   129


     387 ---+---------+---------+---------+---------+---------+------ 446
         GGATATGTACTGCCTTGTACAATGATGTCATACTGAGGTTTAACGGTGTTTAGTAATATT
         GGAUAUGUACUGCCUUGUACAAUGAUGUCAUACUGAGGUUUAACGGUGUUUAGUAAUAUU
     421 ---------+---------+---------+---------+---------+---------+ 480
         G  Y  V  L  P  C  T  M  M  S  Y  W  G  L  T  V  F  S  N  I   
     130 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   149


     447 ---+---------+---------+---------+---------+---------+------ 506
         ATAGCAACAGTACCAATTTTAGGTATATGATTATGTTATTGAATTTGGGGAAGTGAATTT
         AUAGCAACAGUACCAAUUUUAGGUAUAUGAUUAUGUUAUUGAAUUUGGGGAAGUGAAUUU
     481 ---------+---------+---------+---------+---------+---------+ 540
         I  A  T  V  P  I  L  G  I  W  L  C  Y  W  I  W  G  S  E  F   
     150 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   169


     507 ---+---------+---------+---------+---------+---------+------ 566
         ATAAACGATTTTACATTATTAAAGTTACATGTATTACATGTGTTATTACCATTTATATTA
         AUAAACGAUUUUACAUUAUUAAAGUUACAUGUAUUACAUGUGUUAUUACCAUUUAUAUUA
     541 ---------+---------+---------+---------+---------+---------+ 600
         I  N  D  F  T  L  L  K  L  H  V  L  H  V  L  L  P  F  I  L   
     170 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   189


     567 ---+---------+---------+---------+---------+---------+------ 626
         CTAATAATATTAATTTTACATTTATTTTGTCTACATTATTTTATGAGTTCTGATGCATTT
         CUAAUAAUAUUAAUUUUACAUUUAUUUUGUCUACAUUAUUUUAUGAGUUCUGAUGCAUUU
     601 ---------+---------+---------+---------+---------+---------+ 660
         L  I  I  L  I  L  H  L  F  C  L  H  Y  F  M  S  S  D  A  F   
     190 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   209


     627 ---+---------+---------+---------+---------+---------+------ 686
         TGTGATAGGTTTGCATTTTATTGTGAAAGATTAAGTTTTTGTATGTGGTTTTATTTGAGA
         UGUGAUAGGUUUGCAUUUUAUUGUGAAAGAUUAAGUUUUUGUAUGUGGUUUUAUUUGAGA
     661 ---------+---------+---------+---------+---------+---------+ 720
         C  D  R  F  A  F  Y  C  E  R  L  S  F  C  M  W  F  Y  L  R   
     210 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   229


     687 ---+---------+---------+---------+---------+---------+------ 746
         GATATGTTTTTAGCATTTTCAATATTATTATGTATGATGTATGTTATATTTATAAATTGG
         GAUAUGUUUUUAGCAUUUUCAAUAUUAUUAUGUAUGAUGUAUGUUAUAUUUAUAAAUUGG
     721 ---------+---------+---------+---------+---------+---------+ 780
         D  M  F  L  A  F  S  I  L  L  C  M  M  Y  V  I  F  I  N  W   
     230 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   249


     747 ---+---------+---------+---------+---------+---------+------ 806
         TATTTTGTATTTCATGAGGAATCTTGAGTTATAGTAGATACACTAAAAACATCAGATAAA
         UAUUUUGUAUUUCAUGAGGAAUCUUGAGUUAUAGUAGAUACACUAAAAACAUCAGAUAAA
     781 ---------+---------+---------+---------+---------+---------+ 840
         Y  F  V  F  H  E  E  S  W  V  I  V  D  T  L  K  T  S  D  K   
     250 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   269


     807 ---+---------+---------+---------+---------+---------+------ 866
         ATATTACCAGAATGATTTTTTTTGTATTTATTCGGTTTTTTAAAGGCAATCCCAGATAAG
         AUAUUACCAGAAUGAUUUUUUUUGUAUUUAUUCGGUUUUUUAAAGGCAAUCCCAGAUAAG
     841 ---------+---------+---------+---------+---------+---------+ 900
         I  L  P  E  W  F  F  L  Y  L  F  G  F  L  K  A  I  P  D  K   
     270 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   289


     867 ---+---------+---------+---------+---------+---------+------ 926
         TTTATGGGTTTGTTTTTAATGGTTATTTTATTATTCTCATTATTTTTATTTATATTGAAT
         UUUAUGGGUUUGUUUUUAAUGGUUAUUUUAUUAUUCUCAUUAUUUUUAUUUAUAUUGAAU
     901 ---------+---------+---------+---------+---------+---------+ 960
         F  M  G  L  F  L  M  V  I  L  L  F  S  L  F  L  F  I  L  N   
     290 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -   309


     927 ---+---------+---------+---------+---------+---------+------  986
         TGTATATTATGATTTGTGTATTGTAGAAGTTCATTATTATGATTAACATATTCGTTAATA
         UGUAUAUUAUGAUUUGUGUAUUGUAGAAGUUCAUUAUUAUGAUUAACAUAUUCGUUAAUA
     961 ---------+---------+---------+---------+---------+---------+ 1020
         C  I  L  W  F  V  Y  C  R  S  S  L  L  W  L  T  Y  S  L  I   
     310 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    329


     987 ---+---------+---------+---------+---------+---------+------ 1046
         TTATTTTATAGTATATGAATGAGTGGTTTTTTAGCATTATATGTAGTATTAGCATATCCA
         UUAUUUUAUAGUAUAUGAAUGAGUGGUUUUUUAGCAUUAUAUGUAGUAUUAGCAUAUCCA
    1021 ---------+---------+---------+---------+---------+---------+ 1080
         L  F  Y  S  I  W  M  S  G  F  L  A  L  Y  V  V  L  A  Y  P   
     330 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    349


    1047 ---+---------+---------+---------+---------+---------+------ 1106
         ATATGAATGGAATTACAATACTGAGTATTATTATTATTTTTGTTGATAGTGTGTAGGTTA
         AUAUGAAUGGAAUUACAAUACUGAGUAUUAUUAUUAUUUUUGUUGAUAGUGUGUAGGUUA
    1081 ---------+---------+---------+---------+---------+---------+ 1140
         I  W  M  E  L  Q  Y  W  V  L  L  L  F  L  L  I  V  C  R  L   
     350 +  -  -  -  -  -  -  -  -  -  +  -  -  -  -  -  -  -  -  -    369


    1107 ---+-------- 1118
         GATTAGTTTAGA
         GAUUAGUUUAGA
    1141 ---------+-- 1152
         D  *  
     370 +