Gene: cytochrome c oxidase subunit I
Species: Trypanoplasma borreli
Notes:
1 --- - - - ---+- ---- ----+----- -- - - + - - 32
DNA ATG G A G GACAG CTCA AATTGATTGA GG G A A C A
RNA-ed AUGuuuGuuuuAuuuGuuuuuuuGACAGuuuCUCAuAA GA UGAuuGGuuuGuuAuAuuuuCuA
1 ---------+---------+---------+-------- -+ ---------+---------+--- 63
AA M F V L F V F L T V S H K M I G L L Y F L
1 - - - - - - - - - + - - - - - - - - - + - 21
33 --- ----+- -- - -- -- - + - -- - - --- -+----- - 66
AGC AATTTA GG G GG TA A G A CG G A CTG GGATTTA G
UuAGCuuuAA UAuuuGGuuuuGuuGGuUAuAuGuAuuCGuuGuuuAuuC GuuuGGA AuuG
64 ------+--- ------+---------+---------+---------+-- ------- +--- 123
L A L I F G F V G Y M Y S L F I R L E L
22 - - - - - - - - + - - - - - - - - - + - 41
67 -- - +----- ----+ ---------+---------+---------+---------+----- 125
CA A GTTTGG GTTGG GTTTTGTTTGGAGACTATCAATTTTATAATGTTATAATTACGGCT
UCAuuAuG UGGuuG UGGuGUUUUGUUUGGAGACUAUCAAUUUUAUAAUGUUAUAAUUACGGCU
124 ------+- ------ --+---------+---------+---------+---------+------ 186
S L C G C G V L F G D Y Q F Y N V I I T A
42 - - - - - - - - + - - - - - - - - - + - - 62
126 ----+---------+---------+---------+---------+---------+---------+- 191
CATGGGCTAATAATGATTTTTGCATTTGTAATGCCTATTATTTTAGGAGGGTTTGCGAATTATTTT
CAUGGGCUAAUAAUGAUUUUUGCAUUUGUAAUGCCUAUUAUUUUAGGAGGGUUUGCGAAUUAUUUU
187 ---+---------+---------+---------+---------+---------+---------+-- 252
H G L I M I F A F V M P I I L G G F A N Y F
63 - - - - - - - + - - - - - - - - - + - - - - 84
192 --------+---------+---------+---------+---------+---------+------- 257
ACACCTATGATGTGTGGTTTTCCAGATTTAATCTTTCCTAGATTAAATAATATAAGTTTTTGAATT
ACACCUAUGAUGUGUGGUUUUCCAGAUUUAAUCUUUCCUAGAUUAAAUAAUAUAAGUUUUUGAAUU
253 -------+---------+---------+---------+---------+---------+-------- 318
T P M M C G F P D L I F P R L N N I S F W I
85 - - - - - + - - - - - - - - - + - - - - - - 106
258 --+---------+---------+---------+---------+---------+---------+--- 323
TTTTTTTTAGGAGGTGTACTATTATTATGTGGATTTATTTCAGAAGAAGGTATGGGAGTAGGTTGA
UUUUUUUUAGGAGGUGUACUAUUAUUAUGUGGAUUUAUUUCAGAAGAAGGUAUGGGAGUAGGUUGA
319 -+---------+---------+---------+---------+---------+---------+---- 384
F F L G G V L L L C G F I S E E G M G V G W
107 - - - + - - - - - - - - - + - - - - - - - - 128
324 ------+---------+---------+---------+---------+---------+--------- 389
ACATTATATCCAACACTAATTTGTTATGATTTTCATTCTAGTTTATCTTGTGATTTTGTAGTATTT
ACAUUAUAUCCAACACUAAUUUGUUAUGAUUUUCAUUCUAGUUUAUCUUGUGAUUUUGUAGUAUUU
385 -----+---------+---------+---------+---------+---------+---------+ 450
T L Y P T L I C Y D F H S S L S C D F V V F
129 - + - - - - - - - - - + - - - - - - - - - + 150
390 +---------+---------+---------+---------+---------+---------+----- 455
TCAGTTCATTTTTTAGGTATATCTAGTATTTTAAATTCTTTAAATTTAGTAGGTACACTATTTGTA
UCAGUUCAUUUUUUAGGUAUAUCUAGUAUUUUAAAUUCUUUAAAUUUAGUAGGUACACUAUUUGUA
451 ---------+---------+---------+---------+---------+---------+------ 516
S V H F L G I S S I L N S L N L V G T L F V
151 - - - - - - - - - + - - - - - - - - - + - - 172
456 ----+---------+---------+---------+---------+---------+---------+- 521
TGTAGAAGAAAGTATTTTAGTTTTGTATTTTGGGTTTTGTTTATATGGGGATTGTTTTTAACTTGT
UGUAGAAGAAAGUAUUUUAGUUUUGUAUUUUGGGUUUUGUUUAUAUGGGGAUUGUUUUUAACUUGU
517 ---+---------+---------+---------+---------+---------+---------+-- 582
C R R K Y F S F V F W V L F I W G L F L T C
173 - - - - - - - + - - - - - - - - - + - - - - 194
522 --------+---------+---------+---------+---------+---------+------- 587
ATTTTATTAATTATCACTTTGCCAATTTTAGCAGGAGGTGTAACAATGATATTTTTAGATAGAAAT
AUUUUAUUAAUUAUCACUUUGCCAAUUUUAGCAGGAGGUGUAACAAUGAUAUUUUUAGAUAGAAAU
583 -------+---------+---------+---------+---------+---------+-------- 648
I L L I I T L P I L A G G V T M I F L D R N
195 - - - - - + - - - - - - - - - + - - - - - - 216
588 --+---------+---------+---------+---------+---------+---------+--- 653
TTTAATACTTCTTTTTTTGATATAATTGGAGGGGGGGACCTTATATTATTTCAACATTTATTTTGA
UUUAAUACUUCUUUUUUUGAUAUAAUUGGAGGGGGGGACCUUAUAUUAUUUCAACAUUUAUUUUGA
649 -+---------+---------+---------+---------+---------+---------+---- 714
F N T S F F D I I G G G D L I L F Q H L F W
217 - - - + - - - - - - - - - + - - - - - - - - 238
654 ------+---------+---------+---------+---------+---------+--------- 719
TTTTTTGGGCATCCAGAAGTATATATAATAATTTTGCCTATATTTGGATTAGTATCCACGTTTATA
UUUUUUGGGCAUCCAGAAGUAUAUAUAAUAAUUUUGCCUAUAUUUGGAUUAGUAUCCACGUUUAUA
715 -----+---------+---------+---------+---------+---------+---------+ 780
F F G H P E V Y I I I L P I F G L V S T F I
239 - + - - - - - - - - - + - - - - - - - - - + 260
720 +---------+---------+---------+---------+---------+---------+----- 785
GATATAATAGGTTTAAGAGGTGTTTTTAGTTTTGTAACTATGATATATTCTATGTTATGTATATGT
GAUAUAAUAGGUUUAAGAGGUGUUUUUAGUUUUGUAACUAUGAUAUAUUCUAUGUUAUGUAUAUGU
781 ---------+---------+---------+---------+---------+---------+------ 846
D I I G L R G V F S F V T M I Y S M L C I C
261 - - - - - - - - - + - - - - - - - - - + - - 282
786 ----+---------+---------+---------+---------+---------+---------+- 851
GTTATTGGGTTTTTTGTATGGGCACACCATATGTTTGTTATAGGTATGGATATAGATTCTAGGGCA
GUUAUUGGGUUUUUUGUAUGGGCACACCAUAUGUUUGUUAUAGGUAUGGAUAUAGAUUCUAGGGCA
847 ---+---------+---------+---------+---------+---------+---------+-- 912
V I G F F V W A H H M F V I G M D I D S R A
283 - - - - - - - + - - - - - - - - - + - - - - 304
852 --------+---------+---------+---------+---------+---------+------- 917
TATTTTGGAAGTCTATCACTATTGATTGGCCTTCCTACATGTATAAAAATATTTAATTGATTTTAT
UAUUUUGGAAGUCUAUCACUAUUGAUUGGCCUUCCUACAUGUAUAAAAAUAUUUAAUUGAUUUUAU
913 -------+---------+---------+---------+---------+---------+-------- 978
Y F G S L S L L I G L P T C I K I F N W F Y
305 - - - - - + - - - - - - - - - + - - - - - - 326
918 --+---------+---------+---------+---------+---------+---------+--- 983
AGTTTTTTGTTTTATGATCTATTGTTGTTAATAGAAGCCTATTTTGTAGTAATTTTTATATTTATG
AGUUUUUUGUUUUAUGAUCUAUUGUUGUUAAUAGAAGCCUAUUUUGUAGUAAUUUUUAUAUUUAUG
979 -+---------+---------+---------+---------+---------+---------+---- 1044
S F L F Y D L L L L I E A Y F V V I F I F M
327 - - - + - - - - - - - - - + - - - - - - - - 348
984 ------+---------+---------+---------+---------+---------+--------- 1049
TTTTTATTTGGAGGCATTACAGGTTTATTGTTAGCTAATGTAGGACTAGATGTATTATTACATGAT
UUUUUAUUUGGAGGCAUUACAGGUUUAUUGUUAGCUAAUGUAGGACUAGAUGUAUUAUUACAUGAU
1045 -----+---------+---------+---------+---------+---------+---------+ 1110
F L F G G I T G L L L A N V G L D V L L H D
349 - + - - - - - - - - - + - - - - - - - - - + 370
1050 +---------+---------+---------+---------+---------+---------+----- 1115
ACGTATTTTGTAGTTGCACATTTTCATTATGTATTATCTTTAGGCGCGGTTATAGGAGTATTTGGG
ACGUAUUUUGUAGUUGCACAUUUUCAUUAUGUAUUAUCUUUAGGCGCGGUUAUAGGAGUAUUUGGG
1111 ---------+---------+---------+---------+---------+---------+------ 1176
T Y F V V A H F H Y V L S L G A V I G V F G
371 - - - - - - - - - + - - - - - - - - - + - - 392
1116 ----+---------+---------+---------+---------+---------+---------+- 1181
GGAGTTTTTCATTTTTGTTGAAAATGAATACCTTTAGAATTTTTTATATTTTTAGTCTATTATAAT
GGAGUUUUUCAUUUUUGUUGAAAAUGAAUACCUUUAGAAUUUUUUAUAUUUUUAGUCUAUUAUAAU
1177 ---+---------+---------+---------+---------+---------+---------+-- 1242
G V F H F C W K W I P L E F F I F L V Y Y N
393 - - - - - - - + - - - - - - - - - + - - - - 414
1182 --------+---------+---------+---------+---------+---------+------- 1247
CTTATAGTATTGTTTTTAGGTTCAAACATTCTATTTTACCCTTTACATAGTTTAGGATTATACTCT
CUUAUAGUAUUGUUUUUAGGUUCAAACAUUCUAUUUUACCCUUUACAUAGUUUAGGAUUAUACUCU
1243 -------+---------+---------+---------+---------+---------+-------- 1308
L I V L F L G S N I L F Y P L H S L G L Y S
415 - - - - - + - - - - - - - - - + - - - - - - 436
1248 --+---------+---------+--- - --- --+--- ------ +- -------- 1299
TTTCCAAGAAGAATTTCTGATTATCC A ATA TTTTTG TATTTA AG AATTGTTG
UUUCCAAGAAGAAUUUCUGAUUAUCCuAuuA AuUUUUUGuUA UAuAGuuuuuuAA UGUUGuu
1309 -+---------+---------+--------- +---------+ ---------+--- ------+ 1370
F P R R I S D Y P I N F L L Y S F L M L F
437 - - - + - - - - - - - - - + - - - - - - - 457
1300 +- - --- - ---+- -- - - - - - -+------ - - 1328
GG G ATA A TGTTG AG G G G G G ATTTTGTG G A
UGGuGuA AuuuuuuuAuUG UGuuuAGuuuuGuuuuGuuGuuGuuuGuuuA GUGuGuuAuu
1371 ------- --+--------- +---------+---------+---------+ ---------+ 1430
G V I F L L C L V L F C C C L F S V L L
458 - - + - - - - - - - - - + - - - - - - - 477
1329 -+--------- + - - - - - - - - - + -- - 1353
GTTTTTTGAGA G G G G G A A G G G A AG G
G UUUUGAGAuuGuuGuuuuuuuuuGuGuuGuAuAuuuuuGuGuuGuuuAuuuAGUuuuuuuuGu
1431 - --------+---------+---------+---------+---------+---------+---- 1494
F W D C C F F L C C I F L C C L F S F F C
478 - - + - - - - - - - - - + - - - - - - - - 498
1354 - -- -- -+--- -- - - - - - + - - -- ----- + - 1382
A GA CC TAATG TG G A A A A G A G GA GCCCA A A
uuuuuuAuuuGAuuuCCuuUAA GuUGuGuAuuAuAuuuAuuGuuAuGuGAuuuuGCCCAuAuuAu
1495 -----+---------+------ ---+---------+---------+---------+--------- 1559
F F I W F P L S C V L Y L L L C D F A H I I
499 - + - - - - - - - - - + - - - - - - - - - + 520
1383 ----- - - + ------ - -- + - - - - - - - - -+- 1411
ATAGA G A G TTTTTG G TG G G G G G A G A G AGA
uAUAGAuGuuuuAuuuGuuUUUUUGuGuUGuuuuuuuGuGuuuuGuGuGuAuuuuGuAuGuAGAuu
1560 +---------+---------+---------+---------+---------+---------+----- 1625
I D V L F V F L C C F F V F C V Y F V C R L
521 - - - - - - - - - + - - - - - - - - - + - - 542
1412 - - - ----+---------+---------+-------- 1447
A A G AGGTGTTTTTTGTATTTAAAAATATTTAAAATA
AuuAuuuuuuGuuuAGGUGUUUUUUGUAUUUAAAAAUAUUUAAAAUA
1626 ----+---------+---------+---------+---------+-- 1672
L F F V *
543 - - - - 546